It looks like common names like "squirrel" or "chipmunk" that cover many different species are taken more as "squirrel-like animal" and "chipmunk-like animal". They are in the same family (Sciuridae).
Just be more specific and it is happy to count them. For example it counts Townsend's chipmunk, Eastern chipmunk, Siberian chipmunk, Douglas squirrel, Eastern gray squirrel, Western gray squirrel, and Red squirrel all as separate animals.
"pigeon" and "dove" are both words for the same family of birds. The bird most people think of with the word "pigeon" is the rock dove (https://en.wikipedia.org/wiki/Rock_dove) or domesticated / feral variants of it.
True. But I did not ask about "pigeon" and "dove." I asked it about "pigeon" and "mourning dove" which are unambiguously different species. Different genuses, even. Zenaida macroura v. Columba livia.